M. abscessus

Boeck L, Burbaud, S, Skwark M, Pearson WH, Sangen J, Weimann A, Everall. I, Bryant JM, Malhotra S, Bannerman BP, Kierdorf K, Blundell TL, Dionne MS, Parkhill JP, Floto RA ‘The Pathobiology of Mycobacterium Abscessus Revealed through Phenogenomic Analysis’. BioRxiv, 1 January 2021, 2021.10.18.464689. https://doi.org/10.1101/2021.10.18.464689. Accepted in Nature Microbiology

Skwark M, Torres P, Copoiu L, Bannerman B P, Floto RA, Blundell TL. Mabellini: a genome-wide database for understanding the structural proteome and evaluating prospective antimicrobial targets of the emerging pathogen Mycobacterium abscessus, Database, Volume 2019, Issue 1, 2019

Bryant JM, Brown KP, Burbaud S, Everall I, Belardinelli JM, Rodriguez-Rincon D, Grogono DM, Peterson CM, Verma D, Evans IE, Ruis C, Weimann A, Arora D, Malhotra S, Bannerman B, Passemar C, Templeton K, MacGregor G, Jiwa K, Fisher AJ, Blundell TL, Ordway DJ, Jackson M, Parkhill J, Floto RA. Stepwise pathogenic evolution of Mycobacterium abscessus. Science. 2021 Apr 30;372(6541):eabb8699. doi: 10.1126/science. abb8699. PMID: 33926925.

Bannerman BP, Vedithi, S, Julvez J, Munir A, Skwark M, Oliver S and Blundell, TL. Comparative pathway analysis of mycobacterial species provides insight into the identification of new drug targets, 2019. doi: https://doi.org/10.1101/535856.

M. leprae

Bannerman BP, Vedithi, S, Julvez J, Munir A, Skwark M, Oliver S and Blundell, TL. Comparative pathway analysis of mycobacterial species provides insight into the identification of new drug targets, 2019. doi: https://doi.org/10.1101/535856.

Waman, VP, Vedithi, SC, Thomas, SE, Bannerman BP, Munir, S, Skwark, MJ, Malhotra S and Blundell, TL. Mycobacterial genomics and structural bioinformatics: opportunities and challenges in drug discovery. 2019. Emerging Microbes and Infections

SARS

Bannerman, B. P, Jorge Júlvez, Alexandru Oarga, Tom L Blundell, Pablo Moreno, and R Andres Floto. 'Integrated Human/SARS-CoV-2 Metabolic Models Present Novel Treatment Strategies against COVID-19'. Life Science Alliance 4, no. 10 (1 October 2021): e202000954. https://doi.org/10.26508/lsa.202000954.

Beaudoin CA, Jamasb AR, Alsulami AF, Copoiu L, van Tonder AJ, Hala S, Bannerman BP, Thomas SE, Vedithi SC, Torres PHM, Blundell TL. Predicted structural mimicry of spike receptor-binding motifs from highly pathogenic human coronaviruses. https://www.sciencedirect.com/science/article/pii/S2001037021002798

Alsulami AF, Thomas SE, Jamasb AR, Beaudoin CA, Moghul I, Bannerman BP, Copoiu L, Vedithi SC, Torres P, Blundell TL. SARS-CoV-2 3D database: understanding the coronavirus proteome and evaluating possible drug targets. Brief Bioinform. 2021 Mar 22;22(2):769-780. doi: 10.1093/bib/bbaa404. PMID: 33416848; PMCID: PMC7929435.

Protists

Londoño PA, Banholzer N, Bannerman BP, Kramer S. Is mRNA decapping by ApaH like phosphatases present in Eukaryotes beyond the Kinetoplastida. 2021. BMC Ecology and Evolution

Shameer, S., Logan-Klumpler, F.J., Vinson, F., Cottret, L., Merlet, B., Achcar, F., Boshart, M., Berriman, M., Breitling, R., Bringaud, F., Bütikofer, P., Cattanach, A. M., Bannerman, B. P. et al. (2014) TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. Nucleic Acids Res. 43: D637–D644.

Bannerman B, Kramer S, Dorrell R, and Carrington M. Multispecies reconstructions uncover widespread conservation, and lineage-specific elaborations in eukaryotic mRNA metabolism, 2018. PLOS ONE 13(3): e0192633.

Jackson, A. P., Sanders, M., Berry, A., McQuillan, J., Aslett, M. A., Quail, M. A., Bannerman, B. P. et al. (2010) The genome sequence of Trypanosoma brucei gambiense, Causative agent of chronic Human African Trypanosomiasis. PLoS Negl. Trop. Dis. 4(4):

Bannerman, B., Peters, N., Fowler, C. H. and Berriman, M. (2008). TrypanoCyc – a metabolic pathway database for Trypanosoma brucei. BMC Bioinformatics. 9(10): 1–2.